Did migration actually complete?

This is the output from the end of a server migration:

Code:

[682/1025] Syncing /var/www/clouds/cloud_1/site_95/sites/g/1002/ to /var/www/clients/client1/web95/sites/g/1002/
     82,599,593 100%    3.96MB/s    0:00:19 (xfr#10731, to-chk=0/12088)
[683/1025] Syncing /var/www/clouds/cloud_1/site_95/ssl/ to /var/www/clients/client1/web95/ssl/
              0   0%    0.00kB/s    0:00:00 (xfr#0, to-chk=0/10)
[684/1025] Syncing /var/www/clouds/cloud_1/site_95/cgi-bin to /var/www/clients/client1/web95/
              0 100%    0.00kB/s    0:00:00 (xfr#0, to-chk=0/1)
[WARN] Source dir/file /var/www/clients/client1/web23/webdav/test2/ for web server does not exist. Skipping sync job.
[INFO] Skipping mail server as we have no job entries for this target.ks in /var/www/clients
[1025/1025]

=============
Migration tool run completed.

This was a migration from 3.2.2 to 3.2.12p1. I'm checking details now. That jump from 684/1025 to 1025/1025 is disturbing.
I don't think that warning is critical - the "web23" site was migrated with no warnings before the "web95" seen above at the end.
The dry-run was clear. That warning was not reported.
I don't see anything else to indicate there was a failure, so for the moment I'm tending to believe the counters are just wrong.

Note also :
From: /var/www/clouds/cloud_1/site_95/cgi-bin
To: /var/www/clients/client1/web95/ << not to cgi-bin
and
From: /var/www/clouds/cloud_1/site_81/web
To: /var/www/clients/client1/web81/ << not to web

I believe these are simply text anomalies. The folders all seem to be where they should be. (Issue report?)

I am feeling the urge to write a script to compare the /var/www tree structures for issues, but (good news!) I trust that you guys have spent a lot of time in this fine tool to get this right. I believe the job was done right without the need to hunt for things that might have silently gone wrong.

"Trust but verify"?
Recognized anomalies, don't worry about it?
Thoughts?

Thanks!

Before my migration tool license expires in a few days I'm looking forward to completing this long-delayed effort.