Two websites sharing an IP, are both pulling up the same website. I can FTP into both separately and have different files uploaded. For some reason, both domains pull up the same site. Please help.
Are you using ISPConfig webinterface to create the websitesite? ISPConfig can manage thousands of websites on a single IP. If while using ISPConfig if you are using manual website creation could be the problem.
Check that you do not mix * and IP addresses in websites. Either use * fro both or the IP for both sites. If you mix * and IP address, then all requests will go to the site that has the IP address assigned.