Nextcloud 13 on ISPConfig 3 Nginx

The following 3 sections need to be commented out for Nextcloud 13 to work on ISPConfig 3 Nginx.
Is there another way to install Nextcloud 13 on ISPConfig 3 without doing the following modifications?
With the modifications it works great. Hoping to find a way where just adding the config through the ISPConfig 3 GUI would be enough to make it work.

# have to disable for nextcloud to work.
#location ~ /\. {
# deny all;
#}


# have to disable this to make nextcloud to work.
# if not we get the following error.
# "Not enough free space, you are uploading 19.8 MB but only 0 B is left"
#location ~ \.php$ {
# try_files /01ccc0dc719a7105b6ddfd073185a06f.htm @php;
#}


# have to disable this to make nextcloud to work.
# the delete does not work for 1.8GB file.
#location @php {
# try_files $uri =404;
# include /etc/nginx/fastcgi_params;
# fastcgi_pass unix:/var/lib/php5-fpm/web3.sock;
# fastcgi_index index.php;
# fastcgi_param SCRIPT_FILENAME $document_root$fastcgi_script_name;
# fastcgi_intercept_errors on;
#}





Below is the complete config for nextcloud for ISPConfig 3 Nginx

server {
listen *:80;

listen *:443 ssl http2;
ssl_protocols TLSv1 TLSv1.1 TLSv1.2;
ssl_certificate /var/www/clients/client1/web3/ssl/nextcloud.example.com-le.crt;
ssl_certificate_key /var/www/clients/client1/web3/ssl/nextcloud.example.com-le.key;

server_name nextcloud.example.com ;

root /var/www/nextcloud.example.com/web/;

if ($scheme != "https") {
rewrite ^ https://$http_host$request_uri? permanent;
}


index index.html index.htm index.php index.cgi index.pl index.xhtml;



error_log /var/log/ispconfig/httpd/nextcloud.example.com/error.log;
access_log /var/log/ispconfig/httpd/nextcloud.example.com/access.log combined;

# have to disable for nextcloud to work.
#location ~ /\. {
# deny all;
#}

location ^~ /.well-known/acme-challenge/ {
access_log off;
log_not_found off;
root /usr/local/ispconfig/interface/acme/;
autoindex off;
index index.html;
try_files $uri $uri/ =404;
}

location = /favicon.ico {
log_not_found off;
access_log off;
expires max;
add_header Cache-Control "public, must-revalidate, proxy-revalidate";
}

location = /robots.txt {
allow all;
log_not_found off;
access_log off;
}

location /stats/ {

index index.html index.php;
auth_basic "Members Only";
auth_basic_user_file /var/www/clients/client1/web3/web/stats/.htpasswd_stats;
}

location ^~ /awstats-icon {
alias /usr/share/awstats/icon;
}

# have to disable this to make nextcloud to work.
# if not we get the following error.
# "Not enough free space, you are uploading 19.8 MB but only 0 B is left"
#location ~ \.php$ {
# try_files /01ccc0dc719a7105b6ddfd073185a06f.htm @php;
#}

# have to disable this to make nextcloud to work.
# the delete does not work for 1.8GB file.
#location @php {
# try_files $uri =404;
# include /etc/nginx/fastcgi_params;
# fastcgi_pass unix:/var/lib/php5-fpm/web3.sock;
# fastcgi_index index.php;
# fastcgi_param SCRIPT_FILENAME $document_root$fastcgi_script_name;
# fastcgi_intercept_errors on;
#}


# ----> below here is what was added from within the GUI of ISPConfig 3 <-----

add_header X-Content-Type-Options nosniff;
add_header X-XSS-Protection "1; mode=block";
add_header X-Robots-Tag none;
add_header X-Download-Options noopen;
add_header X-Permitted-Cross-Domain-Policies none;


location = /.well-known/carddav {
return 301 $scheme://$host/remote.php/dav;
}

location = /.well-known/caldav {
return 301 $scheme://$host/remote.php/dav;
}

client_max_body_size 2000M;
fastcgi_buffers 64 4K;

gzip on;
gzip_vary on;
gzip_comp_level 4;
gzip_min_length 256;
gzip_proxied expired no-cache no-store private no_last_modified no_etag auth;
gzip_types application/atom+xml application/javascript application/json application/ld+json application/manifest+json application/rss+xml application/vnd.geo+json application/vnd.ms-fontobject application/x-font-ttf application/x-web-app-manifest+json application/xhtml+xml application/xml font/opentype image/bmp image/svg+xml image/x-icon text/cache-manifest text/css text/plain text/vcard text/vnd.rim.location.xloc text/vtt text/x-component text/x-cross-domain-policy;


location / {
rewrite ^ /index.php$uri;
}

location ~ ^/(?:build|tests|config|lib|3rdparty|templates|data)/ {
deny all;
}

location ~ ^/(?:\.|autotest|occ|issue|indie|db_|console) {
deny all;
}

location ~ ^/(?:index|remote|public|cron|core/ajax/update|status|ocs/v[12]|updater/.+|ocs-provider/.+)\.php(?:$|/) {
fastcgi_split_path_info ^(.+\.php)(/.*)$;
include fastcgi_params;
fastcgi_param SCRIPT_FILENAME $document_root$fastcgi_script_name;
fastcgi_param PATH_INFO $fastcgi_path_info;
fastcgi_param HTTPS on;
fastcgi_param modHeadersAvailable true;
fastcgi_param front_controller_active true;
fastcgi_pass unix:/var/lib/php5-fpm/web3.sock;
fastcgi_intercept_errors on;
fastcgi_request_buffering off;
fastcgi_read_timeout 900s; # 15 minutes
}

location ~ ^/(?:updater|ocs-provider)(?:$|/) {
try_files $uri/ =404;
index index.php;
}

location ~ \.(?:css|js|woff|svg|gif)$ {
try_files $uri /index.php$uri$is_args$args;
add_header Cache-Control "public, max-age=15778463";
add_header X-Content-Type-Options nosniff;
add_header X-XSS-Protection "1; mode=block";
add_header X-Robots-Tag none;
add_header X-Download-Options noopen;
add_header X-Permitted-Cross-Domain-Policies none;
access_log off;
}

location ~ \.(?ng|html|ttf|ico|jpg|jpeg)$ {
try_files $uri /index.php$uri$is_args$args;
access_log off;
}

}